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FUNDAMENTALS

What Are Peptides? A Complete Research Reference

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What Are Peptides? A Complete Research Reference — Fundamentals research reference for New Zealand laboratories

Peptides are short amino-acid chains that sit between single residues and full proteins. Here is a complete research reference on their structure, classification, and verification.

A peptide is a short chain of amino acids linked by covalent amide (peptide) bonds. By convention, chains of roughly 2 to 50 residues are called peptides; longer sequences are described as proteins. In the research supply chain, peptides are produced through solid-phase synthesis (SPPS) and characterised by chromatography and mass spectrometry before release.

How peptides are classified

  • By length: dipeptides, oligopeptides (up to ~10 residues) and polypeptides (>10).
  • By origin: naturally occurring fragments (e.g. GHK), synthetic analogs (e.g. semaglutide) and cyclic peptides (e.g. Melanotan 2).
  • By function studied: metabolic, regenerative, cosmetic, neuroendocrine, immunomodulatory, longevity.

How research-grade peptides are made

  1. Solid-phase Fmoc synthesis: residues are added one at a time to a resin-bound C-terminus.
  2. Cleavage from resin and global side-chain deprotection using TFA cocktails.
  3. Reverse-phase HPLC purification to remove deletion sequences and truncations.
  4. Lyophilisation into the finished amorphous powder.
  5. QC by analytical HPLC, LC-MS, and where required, endotoxin and residual solvent testing.

What defines research-grade material

  • Batch identifier and synthesis date traceable to the lot record
  • HPLC purity ≥98% (typically ≥99% for peptides under 30 residues)
  • LC-MS confirmed monoisotopic or average mass within ±0.5 Da of theoretical
  • Counterion identity and content (acetate or trifluoroacetate) reported
  • Bacterial endotoxin and residual solvents per the analytical method

Frequently asked

Are peptides the same as proteins?

Chemically they are the same class of molecule. The distinction is length: peptides are short, proteins are long and typically fold into a defined tertiary structure.

Why does purity matter for research?

Impurities include deletion sequences, oxidation products, and counterion salts. Purity below ~95% introduces confounders that make in-vitro results non-reproducible.

Research use only. All information on this page is provided strictly for in-vitro and laboratory research reference. Nothing in this article is medical, therapeutic, dosing, or performance advice for human or veterinary use.

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